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1

On speaking politely in a second language

SCARCELLA, ROBIN, BRUNAK, JOANNA

Journal:

International Journal of the Sociology of Language

Year:

1981

Language:

english

File:

PDF, 1.87 MB

english, 1981

2

Prediction of pH-Dependent Aqueous Solubility of Druglike Molecules

Hansen, Niclas Tue, Kouskoumvekaki, Irene, Jørgensen, Flemming Steen, Brunak, Søren, Jónsdóttir, Svava Ósk

Journal:

Journal of Chemical Information and Modeling

Year:

2006

Language:

english

File:

PDF, 191 KB

english, 2006

3

Implementation and comparison of two text mining methods with a standard pharmacovigilance method for signal detection of medication errors

Eskildsen, Nadine Kadi, Eriksson, Robert, Christensen, Sten B., Aghassipour, Tamilla Stine, BygsÃ¸, Mikael Juul, Brunak, SÃ¸ren, Hansen, Suzanne Lisbet

Journal:

BMC Medical Informatics and Decision Making

Year:

2020

File:

PDF, 1.40 MB

2020

4

Extrapolation of drug induced liver injury responses from cancer cell lines using machine learning approaches

Aguayo-Orozco, Alejandro, Brunak, SÃ¸ren, Taboureau, Olivier

Journal:

Computational Toxicology

Year:

2021

File:

PDF, 690 KB

2021

5

Prediction of the secondary structure of HIV-1 gp120

Hansen, Jan E., Lund, Ole, Nielsen, Jens O., Brunak, Søren, Hansen, John-E. S.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 1.24 MB

english, 1996

6

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

Nikolaj Blom, Thomas Sicheritz-Pontén, Ramneek Gupta, Steen Gammeltoft, Søren Brunak

Journal:

Year:

2004

Language:

english

File:

PDF, 299 KB

english, 2004

7

Knowledge engineering for health: A new discipline required to bridge the “ICT gap” between research and healthcare

Tim Beck, Sirisha Gollapudi, Søren Brunak, Norbert Graf, Heinz U. Lemke, Debasis Dash, Iain Buchan, Carlos Díaz, Ferran Sanz, Anthony J. Brookes

Journal:

Year:

2012

Language:

english

File:

PDF, 322 KB

english, 2012

8

Protein Structures from Distance Inequalities

Jakob Bohr, Henrik Bohr, Søren Brunak, Rodney M.J. Cotterill, Henrik Fredholm, Benny Lautrup, Steffen B. Petersen

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 583 KB

1993

9

Prediction of lipoprotein signal peptides in Gram-negative bacteria

Agnieszka S. Juncker, Hanni Willenbrock, Gunnar von Heijne, Søren Brunak, Henrik Nielsen, Anders Krogh

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 336 KB

english, 2003

10

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

Blair, David R., Lyttle, Christopher S., Mortensen, Jonathan M., Bearden, Charles F., Jensen, Anders Boeck, Khiabanian, Hossein, Melamed, Rachel, Rabadan, Raul, Bernstam, Elmer V., Brunak, Søren, Jens

Journal:

Year:

2013

Language:

english

File:

PDF, 2.60 MB

english, 2013

11

Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds

Geertz-Hansen, Henrik Marcus, Blom, Nikolaj, Feist, Adam M., Brunak, Søren, Petersen, Thomas Nordahl

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 306 KB

english, 2014

12

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

Nielsen, H., Engelbrecht, J., Brunak, S., von Heijne, G.

Journal:

Protein Engineering Design and Selection

Year:

1997

Language:

english

File:

PDF, 273 KB

english, 1997

13

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

Nielsen, Henrik, Engelbrecht, Jacob, Brunak, Søren, Heijne, Gunnar Von

Journal:

International Journal of Neural Systems

Year:

1997

Language:

english

File:

PDF, 593 KB

english, 1997

14

Assessing the accuracy of prediction algorithms for classification: an overview

Baldi, P., Brunak, S., Chauvin, Y., Andersen, C. A. F., Nielsen, H.

Journal:

Year:

2000

Language:

english

File:

PDF, 142 KB

english, 2000

15

Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

Eriksson, Robert, Jensen, Peter Bjødstrup, Frankild, Sune, Jensen, Lars Juhl, Brunak, Søren

Journal:

Journal of the American Medical Informatics Association

Year:

2013

Language:

english

File:

PDF, 296 KB

english, 2013

16

Propionibacterium acnes – disease causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing

Mollerup, Sarah, Friis-Nielsen, Jens, Vinner, Lasse, Hansen, Thomas Arn, Richter, Stine Raith, Fridholm, Helena, Herrera, Jose Alejandro Romero, Lund, Ole, Brunak, Søren, Izarzugaza, Jose M. G., Mouri

Journal:

Journal of Clinical Microbiology

Year:

2016

Language:

english

File:

PDF, 875 KB

english, 2016

17

Network biology concepts in complex disease comorbidities

Hu, Jessica Xin, Thomas, Cecilia Engel, Brunak, Søren

Journal:

Nature Reviews Genetics

Year:

2016

Language:

english

File:

PDF, 915 KB

english, 2016

18

Cutavirus in Cutaneous Malignant Melanoma

Mollerup, Sarah, Fridholm, Helena, Vinner, Lasse, Kjartansdóttir, Kristín Rós, Friis-Nielsen, Jens, Asplund, Maria, Herrera, Jose A.R., Steiniche, Torben, Mourier, Tobias, Brunak, Søren, Willerslev, E

Journal:

Emerging Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 376 KB

english, 2017

19

Population-wide analysis of differences in disease progression patterns in men and women

Westergaard, David, Moseley, Pope, Sørup, Freja Karuna Hemmingsen, Baldi, Pierre, Brunak, Søren

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 964 KB

english, 2019

20

SignalP 5.0 improves signal peptide predictions using deep neural networks

Almagro Armenteros, José Juan, Tsirigos, Konstantinos D., Sønderby, Casper Kaae, Petersen, Thomas Nordahl, Winther, Ole, Brunak, Søren, von Heijne, Gunnar, Nielsen, Henrik

Journal:

Nature Biotechnology

Year:

2019

Language:

english

File:

PDF, 1.40 MB

english, 2019

21

sAOP: Linking chemical stressors to Adverse Outcomes Pathway Networks

Aguayo-Orozco, Alejandro, Audouze, Karine, Siggaard, Troels, Barouki, Robert, Brunak, Søren, Taboureau, Olivier, Cowen, Lenore

Journal:

Year:

2019

Language:

english

File:

PDF, 380 KB

english, 2019

22

Sex differences in text-mined possible adverse drug events associated with drugs for psychosis

SÃ¸rup, Freja Karuna Hemmingsen, Eriksson, Robert, Westergaard, David, Hallas, Jesper, Brunak, SÃ¸ren, Ejdrup Andersen, Stig

Journal:

Journal of Psychopharmacology

Year:

2020

File:

PDF, 1.19 MB

2020

23

Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

Terkelsen, Thilde, Russo, Francesco, Gromov, Pavel, Haakensen, Vilde Drageset, Brunak, SÃ¸ren, Gromova, Irina, Krogh, Anders, Papaleo, Elena

Journal:

Breast Cancer Research

Year:

2020

File:

PDF, 3.33 MB

2020

24

Alcoholic liver disease: A registry view on comorbidities and disease prediction

Grissa, Dhouha, Nytoft Rasmussen, Ditlev, Krag, Aleksander, Brunak, SÃ¸ren, Juhl Jensen, Lars, Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 1.98 MB

2020

25

Disease trajectory browser for exploring temporal, population-wide disease progression patterns in 7.2 million Danish patients

Siggaard, Troels, Reguant, Roc, JÃ¸rgensen, Isabella F., Haue, Amalie D., Lademann, Mette, Aguayo-Orozco, Alejandro, Hjaltelin, Jessica X., Jensen, Anders Boeck, Banasik, Karina, Brunak, SÃ¸ren

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.93 MB

2020

26

Defining a similarity threshold for a functional protein sequence pattern: The signal peptide cleavage site

Nielsen, Henrik, Engelbrecht, Jacob, von Heijne, Gunnar, Brunak, Søren

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 1.26 MB

english, 1996

27

Protein structure and the sequential structure of mRNA: α-Helix and β-sheet signals at the nucleotide level

Søren Brunak, Jacob Engelbrecht

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 1.61 MB

english, 1996

28

Molecular wring resonances in chain molecules

H. Bohr, S. Brunak, J. Bohr

Journal:

Bioelectromagnetics

Year:

1997

Language:

english

File:

PDF, 61 KB

english, 1997

29

Prediction of protein secondary structure at 80% accuracy

Thomas Nordahl Petersen, Claus Lundegaard, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry P. Gippert, Ole Lund

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 81 KB

english, 2000

30

ChemInform Abstract: Improving the Odds in Discriminating “Drug-Like” from “Non Drug-Like” Compounds.

Thomas M. Frimurer, Robert Bywater, Lars Naerum, Leif Noerskov Lauritsen, Soeren Brunak

Journal:

Year:

2001

File:

PDF, 25 KB

2001

31

An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions

Mette Voldby Larsen, Claus Lundegaard, Kasper Lamberth, Søren Buus, Søren Brunak, Ole Lund, Morten Nielsen

Journal:

European Journal of Immunology

Year:

2005

Language:

english

File:

PDF, 245 KB

english, 2005

32

CAM pilot plant for Mexico

Journal:

Journal of Manufacturing Systems

Year:

1985

Language:

english

File:

PDF, 97 KB

english, 1985

33

Integrating life science related data and tools – from the molecular level to the phenotype

Journal:

New Biotechnology

Year:

2010

Language:

english

File:

PDF, 54 KB

english, 2010

34

Blood cell gene expression profiling in rheumatoid arthritis: Discriminative genes and effect of rheumatoid factor

Lone Frier Bovin, Klaus Rieneck, Christopher Workman, Henrik Nielsen, Søren Freiesleben Sørensen, Henrik Skjødt, Adrian Florescu, Søren Brunak, Klaus Bendtzen

Journal:

Immunology Letters

Year:

2004

Language:

english

File:

PDF, 130 KB

english, 2004

35

Recognition of environmental and genetic effects on barley phenolic fingerprints by neural networks

Jan Gorodkin, Bodil Søgaard, Hanne Bay, Hans Doll, Per Kølster, Søren Brunak

Journal:

Computers & Chemistry

Year:

2001

Language:

english

File:

PDF, 100 KB

english, 2001

36

Bias of purine stretches in sequenced chromosomes

David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh

Journal:

Computers & Chemistry

Year:

2002

Language:

english

File:

PDF, 579 KB

english, 2002

37

The biology of eukaryotic promoter prediction—a review

Anders Gorm Pedersen, Pierre Baldi, Yves Chauvin, Søren Brunak

Journal:

Computers & Chemistry

Year:

1999

Language:

english

File:

PDF, 269 KB

english, 1999

38

CAM for developing nations

Journal:

Journal of Manufacturing Systems

Year:

1983

Language:

english

File:

PDF, 585 KB

english, 1983

39

Protein folding and wring resonances

J. Bohr, H. Bohr, S. Brunak

Journal:

Biophysical Chemistry

Year:

1997

Language:

english

File:

PDF, 836 KB

english, 1997

40

Prediction of protein secondary structure at 80% accuracy using a combination of many neural networks

Thomas Nordahl Petersen, Claus Lundegaard, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry P. Gippert, Ole Lund

Journal:

Journal of Molecular Graphics and Modelling

Year:

2000

Language:

english

File:

PDF, 115 KB

english, 2000

41

Quantitative predictions of peptide binding to MHC class I molecules using specificity matrices and anchor-stratified calibrations

S.L. Lauemøller, A. Holm, J. Hilden, S. Brunak, M. Holst Nissen, A. Stryhn, L. Østergaard Pedersen, S. Buus

Journal:

Tissue Antigens

Year:

2001

Language:

english

File:

PDF, 360 KB

english, 2001

42

Sensitive quantitative predictions of peptide-MHC binding by a ‘Query by Committee’ artificial neural network approach

S. Buus, S.L. Lauemøller, P. Worning, C. Kesmir, T. Frimurer, S. Corbet, A. Fomsgaard, J. Hilden, A. Holm, S. Brunak

Journal:

Tissue Antigens

Year:

2003

Language:

english

File:

PDF, 141 KB

english, 2003

43

Identification and Design of p53-Derived HLA-A2-Binding Peptides with Increased CTL Immunogenicity

T. R. Petersen, S. Buus, S. Brunak, M. H. Nissen, L. A. Sherman, M. H. Claesson

Journal:

Scandinavian Journal of Immunology

Year:

2001

Language:

english

File:

PDF, 300 KB

english, 2001

44

Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response

Qiyuan Li, Aron C Eklund, Nicolai J Birkbak, Christine Desmedt, Benjamin Haibe-Kains, Christos Sotiriou, W Fraser Symmans, Lajos Pusztai, Søren Brunak, Andrea L Richardson, Zoltan Szallasi

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 498 KB

english, 2011

45

Cleavage site analysis in picornaviral polyproteins: Discovering cellular targets by neural networks

Nikolaj Blom, Jan Hansen, Søren Brunak, Dieter Blaas

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 6.10 MB

english, 1996

46

Relationship between protein structure and geometrical constraints

Ole Lund, Jan Hansen, Søren Brunak, Jakob Bohr

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 2.23 MB

english, 1996

47

New weakly expressed cell cycle-regulated genes in yeast

Ulrik de Lichtenberg, Rasmus Wernersson, Thomas Skøt Jensen, Henrik Bjørn Nielsen, Anders Fausbøll, Peer Schmidt, Flemming Bryde Hansen, Steen Knudsen, Søren Brunak

Journal:

Year:

2005

Language:

english

File:

PDF, 159 KB

english, 2005

48

Analysis of cell death inducing compounds

Jeppe S. Spicker, Henrik Toft Pedersen, Henrik Bjørn Nielsen, Søren Brunak

Journal:

Archives of Toxicology

Year:

2007

Language:

english

File:

PDF, 244 KB

english, 2007

49

Definition of supertypes for HLA molecules using clustering of specificity matrices

Ole Lund, Morten Nielsen, Can Kesmir, AndersGorm Petersen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Gustav Røder, Sune Justesen, Søren Buus, Søren Brunak

Journal:

Year:

2004

Language:

english

File:

PDF, 910 KB

english, 2004

50

Identification of a new hTERT-derived HLA-A*0201 restricted, naturally processed CTL epitope

Mette Thorn, Mingjun Wang, Henrik Kløverpris, Esben G. W. Schmidt, Anders Fomsgaard, Lynn Wenandy, Annika Berntsen, Søren Brunak, Søren Buus, Mogens H. Claesson

Journal:

Cancer Immunology, Immunotherapy

Year:

2007

Language:

english

File:

PDF, 429 KB

english, 2007